Links

General information on mass spectrometry:

University of Arizona Mass Spectroscopy tutorial
Ion source website
Scripps Institution Center for Mass Spectroscopy
Human Proteinpedia
Spectroscopy Now website

Websites for protein parameters, theoretical protease digestions, and MS data analysis:

ExPASy Expert Protein Analysis System
UCSF Protein Prospector

Proteomics:

ProteomeCommons
Human Proteome Organization (HUPO)
For an excellent description of the LTQ-Orbitrap and other mass spectrometers used in proteomic analyses click here.

Bioinformatics programs to analyze mass spectrometry data:

Scaffold
Sequest

X! Tandem
Mascot

Sample preparation:

Pierce guide to sample preparation for mass spectrometry analysis
University of Utah Core Facility Guidelines

Genomes:

NCBI Genome website